Search SNP

SNP Search
  1. Select Phenotype
  2. Specify region(chromosome, start and end) ,Gene ID (eg. Os01g0117300), or SNPID(eg. SNP0100001203)
  3. Set options such as variant type or minor allel frequency and then submit your search query.
Search by SNP ID

The SNP ID has this format SNPCHXXXXXXXX and it is composed of the prefix SNP for the variant type, CH represents the chromosome number, 01,02,03,04,05,06,07,08,09,10,11,12 and the last 8 X values represent the chromosome coordinate, eg SNP at chromosome chr01, Position 1203, its ID is SNP0100001203.

Result

Tabular view, list of SNPs and the detail of each SNP can also be visualized by clicking at the SNPID of the search result.

Graphical view, the allele frequency Distribution of the selected genome position is displayed.

SNP Table

Allele Frequency Distribution