已发表文章

2018

  • Role of COL6A3 in colorectal cancer.Wei Liu, Li Li, Hua Ye, Huan Tao and Huaqin He. Oncology Reports[Link] [Pdf]
  • Construction and Analysis of Gene Co-Expression Networks in Escherichia coli.Wei Liu, Li Li, Xuhe Long, Weixin You, Yuexian Zhong, Menglin Wang, Huan Tao, Shoukai Lin and Huaqin He. Cells[Link] [Pdf]
  • Transcriptome-derived stromal and immune scores infer clinical outcomes of patients with cancer.Wei Liu, Hua Ye, Ying‑Fu Liu, Chao‑Qun Xu, Yue‑Xian Zhong, Tian Tian, Shi‑Wei Ma, Huan Tao, Ling Li, Li‑Chun Xue, Hua‑Qin He. Oncology Letters[Link] [Pdf]
  • 2017

  • Critical assessment and performance improvement of plant–pathogen protein–protein interaction prediction methods.Yang S, Li H, He H, Zhou Y, Zhang Z. Briefings in Bioinformatics[Link]
  • Prediction of protein-protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.).Ma S, Song Q, Tao H, Harrison A, Wang S, Liu W, Lin S, Zhang Z, Ai Y, He H. Briefings in Bioinformatics[Link]
  • From Saccharomyces cerevisiae to human: The important gene co‑expression modules.W Liu, L Li, H Ye, H Chen, W Shen, Y Zhong, T Tian, H He. Biomedical Reports 7 (2), 153-158.[Link] [Pdf]
  • 2016

  • Gu L, Xue L, Song Q, Wang F, He H, Zhang Z.; Classification of the fragrant styles and evaluation of the aromatic quality of flue-cured tobacco leaves by machine-learning methods. J Bioinform Comput Biol. 2016 Dec;14(6):1650033. doi: 10.1142/S0219720016500335. Epub 2016 Sep 9.[PDF]
  • Lin, S.; Chen, L.; Tao, H.; Huang, J.; Xu, C.; Li, L.; Ma, S.; Tian, T.; Liu, W.; Xue, L.; Ai, Y.; He, H.Impact of SNPs on Protein Phosphorylation Status in Rice (Oryza sativa L.). Int. J. Mol. Sci. 2016, 17, 1738.[PDF]
  • Li K, Xu C, Huang J, Liu W, Zhang L, Wan W, Tao H, Li L ,Lin S ,Harrison A, He H* Prediction and identification of the effectors of heterotrimeric G proteins in rice (Oryza sativa L.).Briefings in Bioinformatics 2016,1-9.[PDF]
  • 2015

  • Lin S, Wan W, Tian T, Wang Y, Liu Q, Zhang W, Ai Y, Xue L , He H* Protein complex and proteomic profile in the roots of Oryza sativa L. in response to cadmium toxicity.Acta Physiol Plant 2015,37:188.[PDF]
  • Lin S, Song Q, Tao H, Wang W, Wan W, Huang J, Xu C, Chebii V, Kitony J, Que S, Harrison A,He, H* Rice_Phospho 1.0: a new rice-specific SVM predictor for protein phosphorylation sites – Sci Rep.2015,5:11940.[PDF]
  • 2014

  • Wang Y., Lin S., Song Q., Li K., Tao H., Huang J., Chen X., Que S., He H* Genome-wide identification of heat shock proteins (Hsps) and Hsp interactors in rice: Hsp70s as a case study – BMC Genomics, 2014, 15:344.[PDF]
  • Chen X., Lin S., Liu Q., Huang J., Zhang W., Lin J., Wang Y., Ke Y., He H*.Expression and interaction of small heat shock proteins (sHsps) in rice in response to heat stress. Biochimica et Biophysica Acta (BBA) – Proteins and Proteomics, 2014, 1844 (4): 818-828.
  • 2012

  • Que S., Li K., Chen M., Wang Y., Yang Q., Zhang W., Zhang B., Xiong B.,He H*,et al.PhosphoRice: a meta-predictor of rice-specific phosphorylation sites. Plant Method,2012,8:5.[PDF]
  • Chen X., Zhang W., Zhang B., He H*, et al. Phosphosproteins regulated by heat stress in rice leaves. Proteome Science, 2011, 9:37.
  • Chen C., Han G., He H* Yield, protein, and remobilization of water soluble carbohydrate and nitrogen of three spring wheat cultivars as influenced by nitrogen input. Agronomy J. 2011, 103: 786-795.
  • Que S. F., Wang Y. F., Chen P. X., Tang Y. R., Zhang Z. D., He H* Evaluation of Protein Phosphorylation Site Predictors. Protein & Peptide Letters, 2010, Vol. 17, No.1,64-69.
  • Chen X. H., Zhuang C. G., He Y. F., Wang L., Han G. Q., Chen C., He H* Photosynthesis, Yield, and Chemical Composition of Tieguanyin Tea Plants (Camellia sinensis (L.) O. Kuntze) in Response to Irrigation Treatments. Agriculture Water Management 2010, 97: 419-425.[PDF]
  • Ke Y., Han G., He H*, Li J. Differential regulation of proteins and phosphoproteins in rice under drought stress. Biochemical Biophysical Research Communication 2009, 379 (1): 133-138.
  • He H and Li J. Proteomic analysis of phosphoproteins regulated by abscisic acid in rice leaves. Biochemical Biophysical Research Communication 2008, 371 (4): 883-888.
  • He H, Xiong J., Shen L. H., Lin W. X. Conditional Genetic Effect of Allelopathy in Rice (Oryza sativa L.) under Different Environmental Conditions. Plant Growth regulation 2004, 44 (3): 211-218.